Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932356.1_cds_XP_016478888.1_70484
CDS Infomation

[gene=LOC107800251] [db_xref=GeneID:107800251] [protein=pentatricopeptide repeat-containing protein At4g20740-like isoform X2] [protein_id=XP_016478888.1] [location=complement(join(75164..76818,77855..78281))] [gbkey=CDS]
Sequence

ATGCCACCCAAATCTGCAGTACTACACAAACCATATTTTTTCTACGGCCACCGTAAACCG
ACTCAGCATCGGCCTACAGTACAAGGCGGCCTTTTCTCCAATCGCCAAACGATAAACCCC
AATCACCCCACCCCCAAAAACTCACCTTCTTCTTCTGCTAATTTTGAGCTTCAAAAATGG
GACCCAGATGGAAATTTGGGCCTAAAATCCGAAAAAGACTCATCTCATGAATTTTTCTCT
TTGGCTCAACGCTTATCACCAATTGGTAGGTATATAGTTGATTCATTCAGGAAACATAAG
AGTTGGGGCCCACCCCTTGTGGCTGACCTTAACCGTCTACGGCGCGTCACTCCTAAGCTT
GTAGCTGAAGTTCTCAAGCACCCTAATATTGATCCTAGAATTTCCTCCAAGTTCTTCCAC
TGGGCTGCTGATCAGGTTCCTGAGCTGATGCATATGCAAGGAAAGCCGCCTAGTGAGAAA
CAATTTGAAATCTTGATCAGAATGCACAGTGATGCTAACAGGGGTCTTAGAGTGTACTAT
GTCTATGAGAAAATGAAGAAATTTGGGGTAAAACCAAGAGTTTTTCTGTATAATAGAATA
ATGGATGCTTTGGTTAAAACCAATCATTTGGACCTGGCTATGTCAGTTTATGATGATTTC
AAGAAGGATGGGTTGGTGGAGGATAGTATGACTTTCATGATCTTGATAAAGGGACTATGC
AGGTTAGGGCGGATGGATGAAGTGTTTGAGCTTTTGGGTCGGATGAGAGAGAATCTTTGC
AAACCTGATGTGTTTGCTTATACAGCAATGGTAAAGATATTGGTTGCAGAGCGGAACTTG
GATGGTTGTTCAAAGGTTTGGGAAGAGATGCAGCGGGATGCAGTTGAACCCGATGTTATT
GCTTATTCAACTTTTATTAATGGTTTATGTAAAATTAATCAGGTTGAAAAAGGCTATGCG
TTGTTTAATGAAATGAAACAAAAGAATTATTTAATAGATAGGGCGATTTATGGATCTTTG
ATTGAATCGTTTGTAGCAAATGGAAAAGTTGGTTTAGCTTGTGATTTGCTTAAAGATCTG
ATGGACTCGGGCTACAGAGCTGATTTGGCAATCTATAATTCTCTTATTGAAGGTTTCTGC
AATGCAAAACTGATCGATAGGGCCTATAAACTTTTCCAAATCACAGTTCAAGAAGATCTT
CAACCTGACTTTACCACTGTAAGGCCCATATTGGTGTCTTATGCAGAGTCAAAGAGAATG
GATGAGATTTGCAAATTGCTTGAGGAACTGCGGCGATTGAGCTATTGCATTCGTGATGAT
TTATCCAAATTCTTTACATTTATGGTAGAGAAGGATGATAGGATTATGATTGCTTTGGAA
GTCTTTGAACATTTGAAAGAAAAAGATTATTGTGGTGTTCCAATATATAACATTCTTATG
GAAGCTCTCTATAAGAATGGTGAGGTGAACAAGTCACTCACATTGTTCTCTGAATTGCGC
GATTCATATTATGAACCTGATTCATCGACTTACAGCAATGCTGTCCAATGTTTTGTAGAG
GTCGGAGATGTACAGGAGGCATGTAATTGCTATAACAGAATTAAAGAGATGTCTTTGATT
CCGTCGGTTGCTGCGTATCGTTCTCTTGTCAAAGGGCTTTGCAAAATAGGGCAGATAGAT
CCAGCAATGATGCTAATTCGTGACTGCCTAGGCAATGTGGCGAGTGGCCCTATTGAGTTT
AAGTATATTCTCACTATTATTCATGTCTGTAAAACGAATGATGCTGAGAAGGTAATGAAA
GTCTTAGATGAAATGCTAGAAGAGGGCTATTCTCCTGATAATGTTGTATATTGCGCTGTA
ATTTCTGGCATGTGCAAACATGGAACAATTGAAGAAGCACGGAATTTTTTTGCAAATATG
AGAAAGCGAAAACATCTTACTGAAGCCGACTTAGTTGTTTATGATGAGGTGCTTATTGAC
CACATGAAGAAGAAGACTGCAGACTTGGTGTTGTCTGGATTGAAATTTTTTGGTCTGGAA
TCAAAGTTAAAAGCAAAGGGGTCTACCCTTTTAGCAGGTTGA

Peptide Sequence

PEP ID

XP_016478888.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like isoform X2 [Nicotiana tabacum]
Sequence

MPPKSAVLHKPYFFYGHRKPTQHRPTVQGGLFSNRQTINPNHPTPKNSPSSSANFELQKW
DPDGNLGLKSEKDSSHEFFSLAQRLSPIGRYIVDSFRKHKSWGPPLVADLNRLRRVTPKL
VAEVLKHPNIDPRISSKFFHWAADQVPELMHMQGKPPSEKQFEILIRMHSDANRGLRVYY
VYEKMKKFGVKPRVFLYNRIMDALVKTNHLDLAMSVYDDFKKDGLVEDSMTFMILIKGLC
RLGRMDEVFELLGRMRENLCKPDVFAYTAMVKILVAERNLDGCSKVWEEMQRDAVEPDVI
AYSTFINGLCKINQVEKGYALFNEMKQKNYLIDRAIYGSLIESFVANGKVGLACDLLKDL
MDSGYRADLAIYNSLIEGFCNAKLIDRAYKLFQITVQEDLQPDFTTVRPILVSYAESKRM
DEICKLLEELRRLSYCIRDDLSKFFTFMVEKDDRIMIALEVFEHLKEKDYCGVPIYNILM
EALYKNGEVNKSLTLFSELRDSYYEPDSSTYSNAVQCFVEVGDVQEACNCYNRIKEMSLI
PSVAAYRSLVKGLCKIGQIDPAMMLIRDCLGNVASGPIEFKYILTIIHVCKTNDAEKVMK
VLDEMLEEGYSPDNVVYCAVISGMCKHGTIEEARNFFANMRKRKHLTEADLVVYDEVLID
HMKKKTADLVLSGLKFFGLESKLKAKGSTLLAG

Transcript Sequence

Gene sequence data has not been registered.